Basic Information
VIS ID
TVIS44028452
Fusion event
HTLV-1-RUFY3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
NCBI36/hg18
Start
71808543/70723962 (Hg38)
End
71808543/70723962 (Hg38)
Orient
-
Location type
Intronic
Target gene
RUFY3
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-505-3p
Nearest miRNA
hsa-mir-12113/Upstream/4447034; hsa-mir-1243/Downstream/5849606;
Nearest TSS
ENST00000502981/Upstream/1951; ENST00000513597/Downstream/10384;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/18053, chr4-CpG: 122/Downstream/114985
Upstream sequence
GAATTTTCCCATTGTGTTTGATAAGCATTTTATCTTCCCAGTCAGCCTTAGCCTTGAGAAAGTTTTAGGGATGGTTAATAACACAGAACACAAAGCAGTC
Downstream sequence
ATTTTGGGTGTGTCTTTAAGAACAATGTTTAAGTGGTTTTTAAGACCCTTTGCATCTTTTAACAATTGGTTTGTTAATTAGACAGCTTTCTTTGGCTGTA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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