Basic Information
VIS ID
TVIS44028454
Fusion event
HTLV-1-LINC02016 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
NCBI36/hg18
Start
128578108/127376575 (Hg38)
End
128578108/127376575 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02016
Nearest miRNA
hsa-let-7g/Upstream/1586023; hsa-mir-12124/Downstream/198691;
Nearest TSS
ENST00000440867/Upstream/183444; ENST00000479610/Downstream/14095;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/38122, chr3-CpG: 59/Downstream/78957
Upstream sequence
cttgtggatggagcctactaaatgtccccacatggtggaaagggtggacaggctccttcaggcctcttttataagggcactaattccatttgtgagggtc
Downstream sequence
ccaccctcataacttaatcactccctaaacacaccacctatttacactattacactgggtattaggctccaatatataaattttggagggacacaaacag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate