Basic Information
VIS ID
TVIS44028458
Fusion event
HTLV-1-LOC105378998 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr5
Cytoband
q12.1
Reference genome
NCBI36/hg18
Start
61329028/61997444 (Hg38)
End
61329028/61997444 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5H
Target gene
LOC105378998
Nearest miRNA
hsa-mir-10397/Upstream/2293741; hsa-mir-103a-1/Downstream/10172023;
Nearest TSS
ENST00000502646/Upstream/119335; ENST00000512541/Downstream/308718;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/370799, chr5-CpG: 141/Downstream/308346
Upstream sequence
acttatttactgtgtaccatgtagcaggcacgctgctaacatgctcattatataccagtgcttctctatcctggctacacattagaatcacctgggaaCT
Downstream sequence
TAGCTTAACAGCAACAAAAGGGCACCCTAATGTGTAGCCAATGGTTGAGAAATGCTGATATacaccatctcggtagaggtatactattattatactcgtt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate