Basic Information
VIS ID
TVIS44028482
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p34.1
Reference genome
NCBI36/hg18
Start
45086480/44848221 (Hg38)
End
45086480/44848221 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-12136/Upstream/302669; hsa-mir-101-1/Downstream/6211616;
Nearest TSS
ENST00000473358/Upstream/5158; ENST00000461035/Downstream/27401;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/4734, chr1-CpG: 38/Downstream/138129
Nearby gene
PTCH2(-5277) ; EIF2B3(+2301) ;
Nearest cancer related gene
PTCH2(TSG, -5277) ;
Upstream sequence
CCCCTTCCTCAGACACATTTAACTATTTAGAAAGCTGCATACAAAGGCCTGGTTTATGTACCTCCTTAGGAGTAGGGATAGCTGTGGATAAAGAAAGTGT
Downstream sequence
ATCCCCTGCAATTCTCTGGAAATAGAAACAACTTCTCAACTAGGCCATGCAGGCCCTAGATTCCTGTTGGGGCTACAGCTAAACACAATTTCCCTCTCTC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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