Basic Information
VIS ID
TVIS44028491
Fusion event
HTLV-1-LOC102723914 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q26
Reference genome
NCBI36/hg18
Start
118969285/117828682 (Hg38)
End
118969285/117828682 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102723914
Nearest miRNA
hsa-mir-12113/Upstream/3171828; hsa-mir-1305/Downstream/7678577;
Nearest TSS
ENST00000502981/Upstream/173872; ENST00000442020/Downstream/5719;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/742979, chr4-CpG: 80/Downstream/204573
Upstream sequence
TGAAATACATTTAAAAACAAATCTACAGAGAATAGTAAACAAGAACGAATGGAGCAGAAAGGAAGAATGTAACTGACATATAGCTTTTGATGTTATTAGG
Downstream sequence
TCAAGACCTTCACAAGCTGGACCTTCAGTTTGAATTCGTGTGCACAATTCATGTATCAGGAATAACAATTCACAACATAACACGTAATTACATTCCATTT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate