Basic Information
VIS ID
TVIS44028496
Fusion event
HTLV-1-ARNT2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q25.1
Reference genome
NCBI36/hg18
Start
78567014/80487618 (Hg38)
End
78567014/80487618 (Hg38)
Orient
+
Location type
Intronic
Target gene
ARNT2
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-let-7e-5p
Nearest miRNA
hsa-mir-10393/Upstream/1277747; hsa-mir-11181/Downstream/93485;
Nearest TSS
ENST00000557528/Upstream/17375; ENST00000558849/Downstream/63486;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/82567, chr15-CpG: 187/Downstream/207237
Upstream sequence
CAGGACATAGTCTGTGACTGACACCTGGCCCGCTCAGGCCTGGCTCTGACAGCCTGCAAGGTACGGGCTCAGTTTCCAGATGTTGGACTTAGATAGCTGG
Downstream sequence
TACTTGACCATTGTGCCTACATTTCCAGAAGCTTCCTTTATAATCGGACCCTGAAACCAGACCAGGGCACCTGCCCCTCACCAGTCTCCTTCGTCTTCTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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