Basic Information
VIS ID
TVIS44028503
Fusion event
HTLV-1-LINC02276 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q31.21
Reference genome
NCBI36/hg18
Start
142716858/141576255 (Hg38)
End
142716858/141576255 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02276
Nearest miRNA
hsa-mir-12113/Upstream/16068948; hsa-mir-1305/Downstream/1767205;
Nearest TSS
ENST00000502981/Upstream/178; ENST00000505351/Downstream/60344;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/355050, chr4-CpG: 69/Downstream/59980
Upstream sequence
tcataaccatgaatcacaaatgggccctttatctgccagatctttcactattttagaaataaaatattacgttgaaaataaaattttcactgtgttgtac
Downstream sequence
tttctttctcctgaaactccaaatactgcttcatccacctttactctcagctgatggccttgctctctgtttcactaagaaaaatgaagcaatcagatga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate