VISDB Viral Integration Site DataBase

VIS ID

TVIS44028508

Fusion event

HTLV-1-TMOD3 integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr15

Cytoband

q21.2

Reference genome

Start

End

49924685/51845196 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-145-5p ; hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-34a-5p ; hsa-mir-505-3p ; hsa-mir-365a-3p ; hsa-mir-365b-3p ; hsa-mir-4282 ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-520g-3p ; hsa-mir-518a-5p ; hsa-mir-520h ; hsa-mir-527 ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-4671-3p ; hsa-mir-548at-5p ; hsa-mir-3677-5p ; hsa-mir-5094 ; hsa-mir-126-5p ; hsa-mir-3646 ; hsa-mir-4477a ; hsa-mir-874-5p ; hsa-mir-6782-3p ; hsa-mir-4276 ; hsa-mir-4775 ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-8075 ; hsa-mir-3134 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-4772-5p ; hsa-mir-383-5p ; hsa-mir-3679-5p ; hsa-mir-1185-5p ; hsa-mir-3160-3p ; hsa-mir-5190 ; hsa-mir-5683 ; hsa-mir-328-3p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-888-3p ; hsa-mir-1261 ; hsa-mir-29a-5p ; hsa-mir-494-3p ; hsa-mir-6757-3p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-5089-5p ; hsa-mir-6869-5p ; hsa-mir-1200 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-767-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-3934-5p ; hsa-mir-6504-3p ; hsa-mir-552-3p ; hsa-mir-378a-5p ; hsa-mir-6778-3p ; hsa-mir-4454 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-3180-5p ; hsa-mir-623 ; hsa-mir-627-3p ; hsa-mir-5088-3p ; hsa-mir-5195-3p ; hsa-mir-3159 ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p

Nearest miRNA

hsa-mir-10393/Upstream/531087; hsa-mir-11181/Downstream/431921;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/14941, chr15-CpG: 57/Downstream/126175

Upstream sequence

CCCCAAGATTGGGTTAAATGGTGTTTCCTTAAAATCATAGACAATTAGAATTAGAAGAGACCTGAGTCCATCAGGCTcagggatgaaatgactaggtttc

Downstream sequence

aacctttgccaagtctcatctactggtagtagctgcctaaggactgagggaggatctgtgctcagtgaaaaaaaggctgtttgatttgccgtgtttgtca