Basic Information
VIS ID
TVIS44028512
Fusion event
HTLV-1-AGBL1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
NCBI36/hg18
Start
85004370/86660135 (Hg38)
End
85004370/86660135 (Hg38)
Orient
+
Location type
Intronic
Target gene
AGBL1
Nearest miRNA
hsa-mir-10393/Upstream/834405; hsa-mir-11181/Downstream/1286071;
Nearest TSS
ENST00000557528/Upstream/28999; ENST00000560803/Downstream/328291;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/819251, chr15-CpG: 36/Downstream/1595288
Upstream sequence
CCACGGCTTGGCAATTCTTGGATTGTTATGAATTTAGCATATTCCCTTTATCTAGTAAGCAGAACCATAGATGTTTAGACCTACTCCCGCAAGAAAGACG
Downstream sequence
GTTTCCTGCAGAAAATGTCAGTTTTCCACTCCAGGCAAGGAGCAGAAAGGAGGGACTGCAGTATCTTCATTTTCATCTGAAAAGATCTACAGGGGCCGAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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