Basic Information
VIS ID
TVIS44028513
Fusion event
HTLV-1-LINC02494 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
NCBI36/hg18
Start
59096117/58535195 (Hg38)
End
59096117/58535195 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA4B
Target gene
LINC02494
Nearest miRNA
hsa-mir-12113/Upstream/5822448; hsa-mir-1243/Downstream/2387424;
Nearest TSS
ENST00000502981/Upstream/815160; ENST00000513836/Downstream/1133;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1339246, chr4-CpG: 222/Downstream/2664970
Upstream sequence
ttgatttgctaatattttgttgagaatttttgcattaaaattcatcacagatattagcgtgtgattttgttttgtatctttttgtggctttgatatcagg
Downstream sequence
gtaatactggcctcatgaatctggaagtatttcctcctcttattttttttaacagtttaagtaggattggtattagttcttcattaaatatttggtagaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate