Basic Information
VIS ID
TVIS44028514
Fusion event
HTLV-1-MCTP2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
NCBI36/hg18
Start
92800449/94456216 (Hg38)
End
92800449/94456216 (Hg38)
Orient
-
Location type
Intronic
Target gene
MCTP2
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-10393/Upstream/1551741; hsa-mir-1302-10/Downstream/1877045;
Nearest TSS
ENST00000557528/Upstream/56685; ENST00000449432/Downstream/20164;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/224466, chr15-CpG: 70/Downstream/388556
Upstream sequence
tctactcttaaaagtattaacaagtccagatgataagttattctgttactcAAGATATAGTAAGACTCTTTAGCCTAGTCTTTGGATATTTAATACTCCA
Downstream sequence
AACATCAAATTCATTATAAAGTAACAGGACTCATGAGCATCGTTATTTTGGCATACTAACTCATGCTTTCTTCACAACCAGAACCTCACTATTTGGGTGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate