Basic Information
VIS ID
TVIS44028527
Fusion event
HTLV-1-LOC112267962 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
NCBI36/hg18
Start
81293400/80526964 (Hg38)
End
81293400/80526964 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC112267962
Nearest miRNA
hsa-mir-10398/Upstream/1987655; hsa-mir-1202/Downstream/9785778;
Nearest TSS
ENST00000381078/Upstream/60006; ENST00000614959/Downstream/1024722;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/419995, chr6-CpG: 231/Downstream/1224452
Upstream sequence
GTTGCTGAAATGAATCAGGGCTAAGCTTTGGTCACAACTTGTCCATTTTTAGGTTCTCTGGGAACCAAGTTATCTATGACTGTATAGAAGAGCCATGAGT
Downstream sequence
GACTCTTCCCTCAGTATTCTTGCTATTTCACCTTTTGCTCCGTCCTTACTCTTTTCCAGTTGAAGAGCTTTCCATGTATAAATCAAAAGTGGAGGTTGGT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate