Basic Information
VIS ID
TVIS44028539
Fusion event
HTLV-1-ZC3H12B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chrX
Cytoband
q12
Reference genome
NCBI36/hg18
Start
64545588/65408983 (Hg38)
End
64545588/65408983 (Hg38)
Orient
+
Location type
Intronic
Target gene
ZC3H12B
miRNAs that regulate target gene
hsa-mir-6759-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6721-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6760-5p ; hsa-mir-6873-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-15b-3p ; hsa-mir-3123 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-1227-3p ; hsa-mir-194-5p ; hsa-mir-6811-3p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-519e-3p ; hsa-mir-515-3p ; hsa-mir-33b-3p ; hsa-mir-371a-3p ; hsa-mir-371b-3p ; hsa-mir-508-5p ; hsa-mir-651-5p ; hsa-mir-7977 ; hsa-mir-4266 ; hsa-mir-342-3p ; hsa-mir-383-3p ; hsa-mir-1228-3p ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-4284 ; hsa-mir-24-3p
Nearest miRNA
hsa-let-7f-2/Upstream/1622896; hsa-mir-105-1/Downstream/609887;
Nearest TSS
ENST00000429181/Upstream/42345; ENST00000338957/Downstream/79752;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/818, chrX-CpG: 43/Downstream/125453
Upstream sequence
TGACATCTTGGCAACTGCCTAGTTAATGCCAGTGGCCTGTACCATATTATGGAAAACTGTTAACTGCTTAATTGGGTAATTTTCAAAGAAAGTAATGTTG
Downstream sequence
TTAAATGGGGTGAAATAAGAAGTTAAATTTGAAAGTGAATGTGTTCAAATGAAAGGTTTGATAATTGCATCTGTTACTACTTAGTTTCATAGGCTTTAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate