Basic Information
VIS ID
TVIS44028544
Fusion event
HTLV-1-ICA1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
NCBI36/hg18
Start
8256483/8250328 (Hg38)
End
8256483/8250328 (Hg38)
Orient
-
Location type
Intronic
Target gene
ICA1
Nearest miRNA
hsa-mir-339/Upstream/1183283; hsa-mir-10399/Downstream/9876892;
Nearest TSS
ENST00000635602/Upstream/13434; ENST00000458624/Downstream/11724;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/280464, chr7-CpG: 118/Downstream/11073
Upstream sequence
CAATTTCTTATGGAGAGAAGTGTATTTGAGTATAAATATTAAAATAGTTTCAGTAGAAGCAGTGAAAAAAACTGGAACAATTCCTCCAGGCATAATTAAC
Downstream sequence
CatattaattattatttttaaaatCCTGATTCATCAAATCCTGTTCTCAAGTGGTTGAGAAATGGGCATTCCCATGGAGGATGGGAAGTTCAATTAGCCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate