Basic Information
VIS ID
TVIS44028545
Fusion event
HTLV-1-CECR3 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr22
Cytoband
q11.1
Reference genome
NCBI36/hg18
Start
16117937/17257047 (Hg38)
End
16117937/17257047 (Hg38)
Orient
+
Location type
Intronic
Target gene
CECR3
Nearest miRNA
hsa-let-7a-3/Downstream/507133;
Nearest TSS
ENST00000624155/Upstream/35058; ENST00000497534/Downstream/9686;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/84959, chr22-CpG: 230/Downstream/111528
Upstream sequence
AAGGACCTTGAGATGGGAGCATGCGTTTTACACAGGAAGGCCCAGATTTGGCCCAGTCTGCcccaagaccacctaacttgtcagtagcaaagctgggatg
Downstream sequence
aataaaagctcagcttcctgactccctgtccccagttctttccaccactccagctgGCCACTCCCAATCCCCCTGCTAAGCCAACCCACCTACAGTGTCA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate