Basic Information
VIS ID
TVIS44028552
Fusion event
HTLV-1-LOC100128317 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
NCBI36/hg18
Start
81055285/81588033 (Hg38)
End
81055285/81588033 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC100128317
Nearest miRNA
hsa-mir-10525/Upstream/5672764; hsa-mir-10399/Downstream/10615982;
Nearest TSS
ENST00000635602/Upstream/400243; ENST00000454066/Downstream/174963;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/668623, chr7-CpG: 25/Downstream/23032
Upstream sequence
TCTAACATACAGCACATCAAATTGAAATTTAAATGGAATTCATTGACTTTCTTCCACCATTTATGTTCTTTCAGGCCAGAAAGTTAGTATCTTCAAATAT
Downstream sequence
TAACTCTTCCCTCGAATTATCTTATCAGCAGCAAATTCTCTATTTTTACTCCAATCTCTTGCATTTTCCCCTTCTTGCTATTTTCTCAATTACCTTATTG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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