Basic Information
VIS ID
TVIS44028571
Fusion event
HTLV-1-RNF212B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
NCBI36/hg18
Start
22793546/23254497 (Hg38)
End
22793546/23254497 (Hg38)
Orient
-
Location type
Intronic
Target gene
RNF212B
Nearest miRNA
hsa-mir-4707/Upstream/297468; hsa-mir-1185-1/Downstream/134099;
Nearest TSS
ENST00000550708/Upstream/14151; ENST00000470456/Downstream/3988;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/158982, chr14-CpG: 33/Downstream/31415
Upstream sequence
tgacatgaggccagaaatttgagaccagcttgggcaacatagcaggaccccatctctatcaaaataaaaataaaTAAAAATAAGAACTGGGAAGGTCATT
Downstream sequence
CTTTAGTACAAAAATGATAATCAAACTAATATTCATTTCCAAAGCATATATTACTTTTTTGTATGTGtgtgcttttggtagagatagcattttgccacgt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate