Basic Information
VIS ID
TVIS44028572
Fusion event
HTLV-1-MIR4713HG integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q21.2
Reference genome
NCBI36/hg18
Start
49134412/51054923 (Hg38)
End
49134412/51054923 (Hg38)
Orient
+
Location type
Intronic
Target gene
MIR4713HG
Nearest miRNA
hsa-mir-10393/Upstream/694513; hsa-mir-11181/Downstream/187267;
Nearest TSS
ENST00000557528/Upstream/17435; ENST00000559672/Downstream/39782;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/145850, chr15-CpG: 136/Downstream/38741
Upstream sequence
TGAAGTCTGTGTGGGGCTAGATCAATTGAGCCATCTTGTACCATTGCTTCTTTTGAAATTACTTTCCCATCACTTTGCAAAATGATATGTTTGTTATTGG
Downstream sequence
GGACCTAAAAATGTAGCTATTCTAACTCTGCTTTTGTGGGTTCTCATATTGAGAGTTTTGTACAGAGCTCTGAGCACAAATTCACATCTAGAGTCCTGCT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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