Basic Information
VIS ID
TVIS44028583
Fusion event
HTLV-1-SCFD1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
NCBI36/hg18
Start
30163772/30624815 (Hg38)
End
30163772/30624815 (Hg38)
Orient
-
Location type
Intronic
Target gene
SCFD1
miRNAs that regulate target gene
hsa-mir-186-5p
Nearest miRNA
hsa-mir-208a/Upstream/2991537; hsa-mir-1185-1/Downstream/389831;
Nearest TSS
ENST00000550708/Upstream/2483; ENST00000556413/Downstream/3394;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/65209, chr14-CpG: 122/Downstream/249334
Upstream sequence
atcttcccatttcaaccatgataaaagccaaagtgatcttacagtgttctacaaggctttatacgatctggtttccatgtagcttttggacctcactccc
Downstream sequence
tatttctcttccctctccttgaacccaccaggaatgctcccaccttcgagcctttgtatttgtttcttctttgtggagtactgtttcagagataatctcc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate