Basic Information
VIS ID
TVIS44028599
Fusion event
HTLV-1-LOC105374060 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q13.32
Reference genome
NCBI36/hg18
Start
119831775/118630238 (Hg38)
End
119831775/118630238 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105374060
Nearest miRNA
hsa-let-7g/Upstream/1779871; hsa-mir-12124/Downstream/1454326;
Nearest TSS
ENST00000440867/Upstream/72570; ENST00000477009/Downstream/300015;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/632521, chr3-CpG: 98/Downstream/404007
Upstream sequence
CACATGTTCTGTGAGTAATGCAAAGGCCCCCAGTGAACTCATGGGCCAAAAAAGAAAATATGTCTACACTAATTGAAAAATACACAAAAACAGCGTAAGA
Downstream sequence
AAAGACTGCCAGATAAAATGTTAGGTGAGATCAAGGAATGGTGGGATTTCTAAAAAGATGAAGAAAACTGGAGTACATAGAATTTGAACTGAGACTGAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate