Basic Information
VIS ID
TVIS44028612
Fusion event
HTLV-1-LINC01643 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
NCBI36/hg18
Start
32761261/34035272 (Hg38)
End
32761261/34035272 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01643
Nearest miRNA
hsa-mir-1286/Upstream/598603; hsa-let-7a-3/Downstream/1300368;
Nearest TSS
ENST00000624155/Upstream/17799; ENST00000624442/Downstream/173990;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/112623, chr22-CpG: 76/Downstream/1222096
Upstream sequence
ttaaatagttgccaaggaagaaattttctgtgaattataaatagtaacattttaaaataaaactgccatattgtgcttaaatgtatctataagcaattag
Downstream sequence
aaactcaccatcatatattaaaaatatgcaagagtaatttatttttggttaacaggatatttcacatTCTTAGGTAAATATTGTTAGGcataggtcaaag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate