Basic Information
VIS ID
TVIS44028636
Fusion event
HTLV-1-LINC01608 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr8
Cytoband
q23.2
Reference genome
NCBI36/hg18
Start
112069023/110987618 (Hg38)
End
112069023/110987618 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01608
Nearest miRNA
hsa-mir-12123/Upstream/6503153; hsa-mir-10400/Downstream/1655875;
Nearest TSS
ENST00000518652/Upstream/220755; ENST00000521904/Downstream/39774;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1011775, chr8-CpG: 21/Downstream/2444979
Upstream sequence
AGAATGTAAGAGTTTTCTGGTTAACAAAATGTCTATAAAATATTAATAATACTTTTTGAAGCATAATCTATTCACTAAAGCCAAAAAGTATATGCATCCT
Downstream sequence
ATAAGGTTTTACATTATTTCTATATTTTGAAATACCTAATTCCATGCTTTAATATGTACAGGCAGTTCAATGATACTTGAATGTATGCTACAATCTAGGC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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