Basic Information
VIS ID
TVIS44028641
Fusion event
HTLV-1-LOC105371473 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
NCBI36/hg18
Start
159728881/161492467 (Hg38)
End
159728881/161492467 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105371473
Nearest miRNA
hsa-mir-101-1/Upstream/265206; hsa-mir-1182/Downstream/664640;
Nearest TSS
ENST00000473358/Upstream/21944; ENST00000473080/Downstream/12963;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/19754, chr1-CpG: 121/Downstream/31767
Upstream sequence
aatggtagctctacctttagttatcagagtgggcaggggtttgtttgttttgttttgagaaatctccatgctatttttcatgatgactgtacttatttac
Downstream sequence
cttcccaccaatggtgtctaagtcttcccttttgtctatctgcttgccaggattggttatttttccttctgtttaatgatagtcatcctaattggggtaa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate