Basic Information
VIS ID
TVIS44028655
Fusion event
HTLV-1-LINC00886 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q25.31
Reference genome
NCBI36/hg18
Start
157998342/156797859 (Hg38)
End
157998342/156797859 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA3D
Target gene
LINC00886
Nearest miRNA
hsa-let-7g/Upstream/5231864; hsa-mir-1224/Downstream/2484787;
Nearest TSS
ENST00000440867/Upstream/46340; ENST00000465728/Downstream/19175;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/122041, chr3-CpG: 116/Downstream/18191
Upstream sequence
tacaataataatcctatgaccccaattttatagatgaaaaaagcttagctcagagagattaagtgacccacccaggaaggacatgttagagctggaatac
Downstream sequence
gaatccagggctgtcttattctaatgtgtctcagccactacaGTGATGAAAAACTGACATCAGTGCCATCAAATGATGTGGAAATGGATTATACAGAAAG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate