Basic Information
VIS ID
TVIS44028658
Fusion event
HTLV-1-VN1R57P integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q21.31
Reference genome
NCBI36/hg18
Start
80786734/81868824 (Hg38)
End
80786734/81868824 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
VN1R57P
Nearest miRNA
hsa-let-7i/Upstream/710363; hsa-mir-1178/Downstream/4876244;
Nearest TSS
ENST00000382841/Upstream/109271; ENST00000550506/Downstream/84895;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/109929, chr12-CpG: 60/Downstream/489401
Upstream sequence
GAAGAAACTCCCAAATATATTTAGTTTTTAATTTTTCTCGGCTGGTCCTGTGCATGCTAGCAATGATCTCTTTTCCTACGTCTATGGTTGCTCAATGGAG
Downstream sequence
CAGCAAAAACATCGTAGAAGAAAAAAAAAAACAGATTAGGGATACTGTTTTGCTGAGCTTCATGAAAAAAATCACGATTTACAATATACAATATTGTGAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate