Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene129361556129332300129359538129317218129324425129330982129338104129321016129324905129314464129317014129327799129329388129324888129325478129328261129328401129338010
Basic Information
VIS ID
TVIS44028671
Fusion event
HTLV-1-LINC01503 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
NCBI36/hg18
Start
131140110/129338010 (Hg38)
End
131140110/129338010 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01503
Nearest miRNA
hsa-let-7a-1/Upstream/945296; hsa-mir-12126/Downstream/531595;
Nearest TSS
ENST00000422679/Upstream/1131; ENST00000423122/Downstream/3833;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/673, chr9-CpG: 31/Downstream/14041
Upstream sequence
ccgtgtgtgcgcgcctgtgtccgtgtgtgcttgggtgtgtcgtgtcattgtgagtgtgctggtgtgtgtgcaccagtgggagtaggggagtgtatattag
Downstream sequence
tgcatgtgtgagtttcagtgtgtatgtgttagtgtgttacgggaaaggggtcctgatccagaccccaagagagggttcttggatctcgcgcaagaaataa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate