Basic Information
VIS ID
TVIS44028694
Fusion event
HTLV-1-ATP10A integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q12
Reference genome
NCBI36/hg18
Start
23654224/25857984 (Hg38)
End
23654224/25857984 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATP10A
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1268a/Upstream/9159; hsa-mir-10393/Downstream/2568507;
Nearest TSS
ENST00000557528/Upstream/163159; ENST00000557558/Downstream/4200;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/121739, chr15-CpG: 142/Downstream/4372
Upstream sequence
tctgtggaatggggatgtggaaatgatatgatcgttgggaggataaaatggaattgtgcatatagaacatttggctcaTATTAACAAGTAAAAAAGGAAC
Downstream sequence
TGCCTCATGAACAAGCCTGCCTTTGGATGACAACCAAGGTTTTAGGAAAAGAAACGTTCTTTTTCCACTGCAACTTGACCTCATGAGCCCAGTAATATAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate