Basic Information
VIS ID
TVIS44028697
Fusion event
HTLV-1-LOC100507103 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q22.2
Reference genome
NCBI36/hg18
Start
92838203/91036100 (Hg38)
End
92838203/91036100 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9D
Target gene
LOC100507103
Nearest miRNA
hsa-mir-101-2/Upstream/1012565; hsa-let-7a-1/Downstream/600151;
Nearest TSS
ENST00000422679/Upstream/39046; ENST00000608240/Downstream/71204;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/233836, chr9-CpG: 61/Downstream/81343
Upstream sequence
CCCCCAGGCCTGGAGGACGGAGTCTGTCCCACATGGCCAACAGCAGATGGGCCCAGGTCCCCCTGCCCATCACAAGAGACGAGGCATAAAACCGTAATGC
Downstream sequence
TAATGTATTTGTTTACGGTGAGGTACAGGCTCCAAAATGACAGGTTCTACCTGTTTTCTGTCCTGAGCAAAGACAGGTGTGGACGGGAGAGAAAGAATAC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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