Basic Information
VIS ID
TVIS44028721
Fusion event
HTLV-1-ENOX1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
NCBI36/hg18
Start
42731312/43259176 (Hg38)
End
42731312/43259176 (Hg38)
Orient
-
Location type
Intronic
Target gene
ENOX1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-526b-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-5692a ; hsa-mir-2681-5p
Nearest miRNA
hsa-mir-2276/Upstream/1690781; hsa-mir-1267/Downstream/936953;
Nearest TSS
ENST00000623511/Upstream/100545; ENST00000434273/Downstream/102189;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/235456, chr13-CpG: 159/Downstream/526722
Upstream sequence
ACACATGCTGATCACATCAGCACTGCAAAGCAAGGctcacagtaccctatgaggtaggtatggttattaccttaattttggaggtgaacaaaatggaagt
Downstream sequence
gcaggggttcagtgtatggcttagggtcactcagattgaaactgggctgcttcatgtccagatctgttcttaacctctacactctgctgCCTCCCTCAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate