Basic Information
VIS ID
TVIS44028750
Fusion event
HTLV-1-LOC105369944 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
q23.2
Reference genome
NCBI36/hg18
Start
101408330/102490422 (Hg38)
End
101408330/102490422 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369944
Nearest miRNA
hsa-let-7i/Upstream/2300473; hsa-mir-1178/Downstream/1440003;
Nearest TSS
ENST00000382841/Upstream/8678; ENST00000266744/Downstream/333977;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/370251, chr12-CpG: 38/Downstream/333920
Upstream sequence
ttgtgaattttgcacattgactttgtatcctgagactttgctgaagttgcttatcagcttaaggagatttggggctgagatgatggggttttcttaatac
Downstream sequence
acaatcatgtcatctacaaacaatttgacttcctctcttcccatttgaatatgctttgtttctttctcttgcttgattgccctggccagaatgtccaata
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate