Basic Information
VIS ID
TVIS44028754
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
186457629/188221875 (Hg38)
End
186457629/188221875 (Hg38)
Orient
-
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/7783485; hsa-mir-1182/Downstream/4494453;
Nearest TSS
ENST00000473358/Upstream/3475; ENST00000426262/Downstream/286663;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1540926, chr1-CpG: 56/Downstream/4586627
Upstream sequence
caatgcccagggactggggatttaaaacaacgaaaggaagcagtcattgaaggatgtcttatttagtcaacatccactgtgggtaactggagcttaaacc
Downstream sequence
cagagggaaattctagaaaatgctgtaaattacatgtctcagaattgtctcactggatggatgggggtgctgagcttttatatattaattcctttcagtc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate