Basic Information
VIS ID
TVIS44028773
Fusion event
HTLV-1-LINCR-0002 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
NCBI36/hg18
Start
192687774/191487291 (Hg38)
End
192687774/191487291 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINCR-0002
Nearest miRNA
hsa-let-7g/Upstream/1657282; hsa-mir-3137/Downstream/3647215;
Nearest TSS
ENST00000440867/Upstream/26128; ENST00000438488/Downstream/70033;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/157370, chr3-CpG: 24/Downstream/375848
Upstream sequence
ttcaggatacaaaataacataagaaaatcagtagtatttatacatgccagcagcaaacaatctgaaatagaaattgagaaaataactccatttataatac
Downstream sequence
ctatcgaaaaaataaaatacctaggaattaacataaccgaaggagtgaaagatctctgcaatgaaaactgtaaaatgttgatgaaaaaaattgaagagga
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate