Basic Information
VIS ID
TVIS44028799
Fusion event
HTLV-1-LOC105375065 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr6
Cytoband
p21.1
Reference genome
NCBI36/hg18
Start
43478587/43402871 (Hg38)
End
43478587/43402871 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6H
Target gene
LOC105375065
Nearest miRNA
hsa-mir-10398/Upstream/1669261; hsa-mir-10524/Downstream/31671;
Nearest TSS
ENST00000381078/Upstream/33393; ENST00000502549/Downstream/24495;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/32777, chr6-CpG: 51/Downstream/24579
Upstream sequence
TCAAGGCATACTTTTAAAAAACCCCAAAAAGATGCTTTTTGGTATCACAGTATTTAATATTTATTTTTTCCTTCATCAATTTTTTTCaatattttgatgc
Downstream sequence
ctactgagtgccaagtactgcaaaattgatgaggatagagacgaataagacatgtctctgatttttcagaaactttgctctggtggaggaaacaaACATG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate