Basic Information
VIS ID
TVIS44028800
Fusion event
HTLV-1-ABCC11 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr16
Cytoband
q12.1
Reference genome
NCBI36/hg18
Start
46769111/48177699 (Hg38)
End
46769111/48177699 (Hg38)
Orient
+
Location type
Intronic
Target gene
ABCC11
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1225/Upstream/14014026; hsa-mir-11401/Downstream/2114917;
Nearest TSS
ENST00000527434/Upstream/21681; ENST00000570174/Downstream/9691;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/716403, chr16-CpG: 31/Downstream/66722
Upstream sequence
atcacacagtttcaggttggaactcaaacccagatctgcctaacgccgagcccactctGCATCAAGTGCAGTTGTGTGTGTTGAGAGGAAAGAACGCTGG
Downstream sequence
AGAAGAAGTTGGATCTGACCACCTGGCTGCAAGCCACAACTCCCCATGCTGGTGCCGTGTCACAGCAGCATCCCTGGGCAGGAAATCAGAGCCCTACAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate