Basic Information
VIS ID
TVIS44028804
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
NCBI36/hg18
Start
62425805/62187545 (Hg38)
End
62425805/62187545 (Hg38)
Orient
+
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-12132/Upstream/108686; hsa-mir-101-1/Downstream/1139380;
Nearest TSS
ENST00000473358/Upstream/66671; ENST00000498273/Downstream/7286;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/444399, chr1-CpG: 33/Downstream/7338
Nearby gene
RPS15AP7(+1552) ;
Upstream sequence
cacccaggctggagtgcagtggcgagatctcagctcactgcaactccgcctcccaggttcaagcaattctcctgcctcagcctcccgagtagctgggatt
Downstream sequence
ataggtgcctgccaccatgtccagctaacttttgtattttttggcagagacagggttttgccatgttggccaggctggtattgaactgacttcaagtgat
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate