Basic Information
VIS ID
TVIS44028818
Fusion event
HTLV-1-LOC105369617 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
NCBI36/hg18
Start
5190950/5211523 (Hg38)
End
5190950/5211523 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105369617
Nearest miRNA
hsa-mir-3649/Upstream/3551143; hsa-let-7i/Downstream/1752176;
Nearest TSS
ENST00000382841/Upstream/167534; ENST00000544842/Downstream/26749;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/68119, chr12-CpG: 56/Downstream/219206
Upstream sequence
AAAGTCCAGGCTCTTCTCTTCTCTGACCCTCCCTTTTCTTGTACATACCTTTTCCCAGTATGATCAGAAAATTATTCATACTAAAATGTGTATGGTTTTG
Downstream sequence
CAGTGCTGTTCCAATCAGAAATATTTACATTGTAACTAGTAAAGAAAAAGCCTTACATGAAAAGAATGAAATACTAATGAGAAAGCTTTAAGCATTAGAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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