Basic Information
VIS ID
TVIS44028820
Fusion event
HTLV-1-SLC35F2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
NCBI36/hg18
Start
107202138/107826202 (Hg38)
End
107202138/107826202 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC35F2
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-98-5p ; hsa-mir-6873-3p ; hsa-mir-4684-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-1283 ; hsa-mir-6771-3p
Nearest miRNA
hsa-mir-10392/Upstream/3976222; hsa-let-7a-2/Downstream/3521555;
Nearest TSS
ENST00000527297/Upstream/106509; ENST00000320578/Downstream/32359;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/234280, chr11-CpG: 61/Downstream/32021
Upstream sequence
acacacaggagtactactgtacagctataaaaagcaaggcacatatttatatgtactgttataaagtgactgccaggtataccttttttaaaaaggaagc
Downstream sequence
aaatgtggagaaaaatgggtatggaatgcaaatatttatctataatttgttaattttttaaaaggaaagataaaactttttttttttttttgagatgcag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate