Basic Information
VIS ID
TVIS44028821
Fusion event
HTLV-1-LINC02745 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
NCBI36/hg18
Start
42010241/42032115 (Hg38)
End
42010241/42032115 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02745
Nearest miRNA
hsa-mir-1343/Upstream/6021911; hsa-let-7a-2/Downstream/1527541;
Nearest TSS
ENST00000527297/Upstream/155481; ENST00000530300/Downstream/53343;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/5521648, chr11-CpG: 49/Downstream/1279774
Upstream sequence
agcattatgtgaatggataaactgttgtatatatagacaatgaaatagtcattgctaaaaataaataagctacaaagccattaaaaacataaaggaatgt
Downstream sequence
taaatgcatattacaaaaggaaagaagcaaatccaaaaagaatacatataataatgtataattccatttatatgcgtttttagaaaaggcaaaactataa
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate