Basic Information
VIS ID
TVIS44028828
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
NCBI36/hg18
Start
39112229/38873970 (Hg38)
End
39112229/38873970 (Hg38)
Orient
-
Location type
Intronic
Target gene
GJA9-MYCBP ; LOC105378663
Nearest miRNA
hsa-mir-12136/Upstream/784641; hsa-mir-101-1/Downstream/1880385;
Nearest TSS
ENST00000473358/Upstream/528; ENST00000531822/Downstream/135;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/293, chr1-CpG: 64/Downstream/117013
Upstream sequence
TGAGCAGTAACGAGCTTGCAGTAGCTTTtgagccaggcactgtagaaaacacgggtattttaaattttaatccttacaacacccctgtagggtgggtatt
Downstream sequence
gttaATTAAGTGGAGTGGTTAGATGTCCAGTGAGTAGAGTCGAGTCCAATCCGGGCAATGAATCACGATGCTATGAACTGGTGAAGGAAAGCCACGGATC
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate