Basic Information
VIS ID
TVIS44028853
Fusion event
HTLV-1-SELENOF integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
p22.3
Reference genome
NCBI36/hg18
Start
87118410/86880139 (Hg38)
End
87118410/86880139 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1D
Target gene
SELENOF
miRNAs that regulate target gene
hsa-mir-5585-3p ; hsa-mir-6794-3p ; hsa-mir-4693-5p ; hsa-mir-8065 ; hsa-mir-4635 ; hsa-mir-550b-3p ; hsa-mir-4661-3p ; hsa-mir-4639-3p ; hsa-mir-1183
Nearest miRNA
hsa-mir-101-1/Upstream/522452; hsa-mir-11399/Downstream/6966693;
Nearest TSS
ENST00000473358/Upstream/45970; ENST00000591456/Downstream/23213;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/174807, chr1-CpG: 89/Downstream/34340
Upstream sequence
CATCTTGGAAAGGCTCCTGCAAAATTCCCACCCGGCAAAGGAAAGGCTCTTCTTTTAAGAAAATAACCCCTTCATGTGTTGTATTTTAAATCTGAAtttc
Downstream sequence
ttttttttttttttgagacagagtctcgttctgtcgcccaggctggagtgcagtggcgtgatctcggctcactgcaacctctgcctcccgggttcaagtg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate