Basic Information
VIS ID
TVIS44028865
Fusion event
HTLV-1-NRCAM integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
107597823/108170142 (Hg38)
End
107597823/108170142 (Hg38)
Orient
-
Location type
Intronic
Target gene
NRCAM
miRNAs that regulate target gene
hsa-mir-708-5p ; hsa-mir-4282
Nearest miRNA
hsa-mir-10525/Upstream/5698611; hsa-mir-10399/Downstream/6483203;
Nearest TSS
ENST00000635602/Upstream/13505; ENST00000491582/Downstream/5215;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/166529, chr7-CpG: 170/Downstream/284815
Nearest cancer related gene
NRCAM(TSG, No orient, 0)
Upstream sequence
TTTTATTgaaatgaaatcattatctctacgagtatcgactctcctaaattcattgcagcattattcacaatagtcaagacatgaaaacaacctaaatatc
Downstream sequence
cattgacagatgaatggataaagaaattaccatatatatatatatttacacaatggaatattattccgactttaaaaaaaaaggaaatcctgccatttgc
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate