Basic Information
VIS ID
TVIS44028867
Fusion event
HTLV-1-LOC105373714 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
NCBI36/hg18
Start
158456852/157892094 (Hg38)
End
158456852/157892094 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105373714
Nearest miRNA
hsa-mir-128-1/Upstream/6523683; hsa-mir-10b/Downstream/1294741;
Nearest TSS
ENST00000437798/Upstream/14411; ENST00000604239/Downstream/25618;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/15261, chr2-CpG: 169/Downstream/564566
Upstream sequence
AGGGTTGGCAATGGGGAACAGGGAAATGGTATCAGAGACCCCTCGGAAAGACTTCATGGTAAATGGCTTGGAGATGAAACATCAGCTCTTTGAGTGGTTA
Downstream sequence
AGCAGGACTGGCTTGCTGATAGAATCCCAAGCCCTTAAACCATTTATCCTCGTAGCTTCCTTTCAAAGTTGGGGGAGCTCTAAGAAAAGTAGGTAAAAAT
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
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