Basic Information
VIS ID
TVIS44028868
Fusion event
HTLV-1-PIP5K1B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q21.11
Reference genome
NCBI36/hg18
Start
70736347/68931611 (Hg38)
End
70736347/68931611 (Hg38)
Orient
+
Location type
Intronic
Target gene
PIP5K1B
Nearest miRNA
hsa-mir-101-2/Upstream/27697776; hsa-let-7a-1/Downstream/1878364;
Nearest TSS
ENST00000422679/Upstream/88336; ENST00000396366/Downstream/82502;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/151035, chr9-CpG: 41/Downstream/81880
Upstream sequence
gctactatgggtacgcggagagaaataagagaaaaaaagaccaattcttccaaaagagagctcacagagaaaaagatatttcaactaaatcctgaaaatg
Downstream sequence
taacccagagttcattaagaagagagacaggaagggcatctcaaggagaaagaacagcatgtgcaaaggcctaagggcagaatgaacatggtaggttcca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate