Basic Information
VIS ID
TVIS44028869
Fusion event
HTLV-1-LOC105376214 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q31.2
Reference genome
NCBI36/hg18
Start
110102018/108299917 (Hg38)
End
110102018/108299917 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376214
Nearest miRNA
hsa-let-7a-1/Upstream/1698895; hsa-mir-12126/Downstream/746312;
Nearest TSS
ENST00000422679/Upstream/45097; ENST00000333999/Downstream/403175;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/582778, chr9-CpG: 67/Downstream/555123
Upstream sequence
CCATCCATGATATCTCTTACTTTAAATCCTTTTTCCTCTCTAATTCAGGAGTAGCATGGACtatttctgagctgctacaatattccaaacactgtacagg
Downstream sequence
gtcctggggttacaaagatgaataaaacagagtctttgccttcaattaacttccaatctagtggTACCAATAAGCGTAGTCAAAAGAAGTAGATCTTATG
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate