Basic Information
VIS ID
TVIS44028872
Fusion event
HTLV-1-SH2D3C integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
NCBI36/hg18
Start
129547447/127745347 (Hg38)
End
129547447/127745347 (Hg38)
Orient
+
Location type
Intronic
Target gene
SH2D3C
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-let-7a-1/Upstream/54552; hsa-mir-12126/Downstream/40486;
Nearest TSS
ENST00000422679/Upstream/627; ENST00000421939/Downstream/9683;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/9780, chr9-CpG: 125/Downstream/8781
Upstream sequence
GCCGATTGACTCTGGCAAGCTGACCAGCCCAGGTGATGCTCTGAAATCACCAGGACCCAGGAGTTTGCATGGCCCCACCCTGAGGCTGCTGCAGCCTTGG
Downstream sequence
GGACCCACTGCTTGGAGGAGCTTCAGTGATCCGGGGAAGCTGAGTACCTGCTGGAGTTTCTTGTGCCACATGTGATTGTTTCTCGACGAATTAGCAATAA
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate