VISDB Viral Integration Site DataBase

VIS ID

TVIS44028878

Fusion event

HTLV-1-FAXC integration

Validated

No

Detection method

HTS

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2019

PubMed ID

Virus name

HTLV-1

Subtype

HTLV-1c

Reference genome

Chromosome

chr6

Cytoband

q16.2

Reference genome

Start

End

99898459/99343862 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-324-3p ; hsa-mir-15b-5p ; hsa-mir-4777-3p ; hsa-mir-4635 ; hsa-mir-488-3p ; hsa-mir-501-5p ; hsa-mir-500b-5p ; hsa-mir-362-5p ; hsa-mir-4662a-3p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-498 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-5697 ; hsa-mir-329-5p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-583 ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-6867-5p ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-6131 ; hsa-mir-18a-3p ; hsa-mir-1913 ; hsa-mir-150-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-1224-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-4713-5p ; hsa-mir-6512-3p ; hsa-mir-6720-5p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-942-5p ; hsa-mir-6845-3p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-877-3p ; hsa-mir-6849-3p ; hsa-mir-5586-5p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-4668-3p ; hsa-mir-548c-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-6888-3p ; hsa-mir-627-3p ; hsa-mir-4778-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-4279 ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4766-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6800-3p ; hsa-mir-6832-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-6807-5p ; hsa-mir-4252 ; hsa-mir-3130-3p ; hsa-mir-6747-3p ; hsa-mir-6752-3p ; hsa-mir-1273g-3p ; hsa-mir-3620-3p ; hsa-mir-3672 ; hsa-mir-4534 ; hsa-mir-511-3p ; hsa-mir-6864-3p ; hsa-mir-8082 ; hsa-mir-873-3p

Nearest miRNA

hsa-mir-10398/Upstream/219166; hsa-mir-1202/Downstream/7440263;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/395769, chr6-CpG: 99/Downstream/5470

Upstream sequence

ATGCCCTCACCTAACCCTTCTTTCACCTGTAATGCCATGGAACCTGCCTTCTGGATGCTCTCTCTCTAGCTCTGTCTTCCTTATTTTCTGCCTTCCCAGT

Downstream sequence

ATCCCCACTTTTACCACACAGCATGTATTTCAGTACCCCTGCTTTTCCCCTTTCTCCTGTCTCAGCCACACATCCATCTTTTCCTTTGGCTACTCTTTTG