Basic Information
VIS ID
TVIS44028888
Fusion event
HTLV-1-SGCG integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr13
Cytoband
q12.12
Reference genome
NCBI36/hg18
Start
22738668/23266529 (Hg38)
End
22738668/23266529 (Hg38)
Orient
+
Location type
Intronic
Target gene
SGCG
Nearest miRNA
hsa-mir-4499/Upstream/2832683; hsa-mir-1267/Downstream/895887;
Nearest TSS
ENST00000623511/Upstream/85577; ENST00000443092/Downstream/88361;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/105852, chr13-CpG: 101/Downstream/108466
Upstream sequence
agtaacactcaggaatcaaaaatcgaatgccacatgttctcacttataagtgggaattaagctatgggtatgcgaaggcatacagagtggtaaaatgagc
Downstream sequence
gttggaggctcagaagaggggaaagtggagggtgagaagtgggtgagagatgaaaaactacctattgggtactatgtacactacttgggtgatgagtgca
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate