Basic Information
VIS ID
TVIS44028908
Fusion event
HTLV-1-DBF4B integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
NCBI36/hg18
Start
40145653/44712759 (Hg38)
End
40145653/44712759 (Hg38)
Orient
+
Location type
Intronic
Target gene
DBF4B
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p
Nearest miRNA
hsa-mir-1180/Upstream/504920; hsa-mir-10226/Downstream/221859;
Nearest TSS
ENST00000595228/Upstream/3897; ENST00000527862/Downstream/20900;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/3849, chr17-CpG: 112/Downstream/45649
Upstream sequence
cgattgcctgacctcacgatctgccctcctcagcctcccaaagtgctgggattacaggtgtgagccaccacacccggcctgtcttcttttttttttatag
Downstream sequence
agatggggtctcactgtgttgcccaggctggtcttgaactcttgggctcaagtgatctgcccacctcggcctcccaaagtgatggaattacaggcgtgag
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate