Basic Information
VIS ID
TVIS44028922
Fusion event
HTLV-1-TARSL2 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
NCBI36/hg18
Start
100055513/101697787 (Hg38)
End
100055513/101697787 (Hg38)
Orient
+
Location type
Intronic
Target gene
TARSL2
miRNAs that regulate target gene
hsa-mir-186-5p
Nearest miRNA
hsa-mir-10393/Upstream/2913285; hsa-mir-1302-10/Downstream/262672;
Nearest TSS
ENST00000557528/Upstream/33345; ENST00000328882/Downstream/3378;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/44645, chr15-CpG: 75/Downstream/26200
Upstream sequence
taagggcggggctgtaagacactgtgaaaacctcagaatgatctactgtaagtgcacctagtaaggcttctgaaagtcttaggagtgtgctttgtagacc
Downstream sequence
ctttccattaaacacgaaggctctgaagactctgcagtgtactattgtctcacagtagcctcccaggcaaagaaggatcggtgtcagaaagatgtggatg
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate