Basic Information
VIS ID
TVIS44028939
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
Curated
Sample type
Nontumor
Disease
Not given
Quality evaluation
Normal
Reported year
2019
PubMed ID
30307560
Virus Sequence
Virus name
HTLV-1
Subtype
HTLV-1c
Reference genome
KF242506
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
NCBI36/hg18
Start
188778421/190542668 (Hg38)
End
188778421/190542668 (Hg38)
Orient
+
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/10104278; hsa-mir-1182/Downstream/2173660;
Nearest TSS
ENST00000473358/Upstream/62289; ENST00000413356/Downstream/82222;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3861719, chr1-CpG: 56/Downstream/2265834
Upstream sequence
ctggtgttgattccacatttttgcagttgcaaactgtgctgctataaagatgcatgtgcaggtatctttcccgtataaggacttcttttcctctgggtag
Downstream sequence
atacccagtagtggtattgccggatcaaatggtagttctactcttagttctttaaggaatctccacattgttttccatagcagttatactagtttacatt
Reference
Turpin, J., et al. Impact of Hepatitis B Virus Coinfection on Human T-Lymphotropic Virus Type 1 Clonality in an Indigenous Population of Central Australia. J Infect Dis ,2019,219(4): 562-567.
Curate